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View Structure Prediction Details

Protein: CB1C_ARATH
Organism: Arabidopsis thaliana
Length: 267 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB1C_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036944 - gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
373.0 [0..1] [267..1]

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Predicted Domain #1
Region A:
Residues: [1-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG  60
   61 PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV IHSRWAMLGA LGCVFPELLA 120
  121 RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN 180
  181 GPLGEAEDLL YPGGSFDPLG LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP 240
  241 IENLADHLAD PVNNNAWAFA TNFVPGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.522879
Match: 1vcrA
Description: An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle