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View Structure Prediction Details

Protein: CAPZA_ARATH
Organism: Arabidopsis thaliana
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAPZA_ARATH.

Description E-value Query
Range
Subject
Range
gi|61371588, gi|... - gi|61371588|gb|AAX43695.1| capping protein muscle Z-line alpha 1 [synthetic construct], gi|61365542|...
443.0 [0..1] [304..1]

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Predicted Domain #1
Region A:
Residues: [1-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEEDELLE TELSYDQKKE IAKWFFLNAP AGEINYVAKD LKAVLSDEEV YNEAAMEAFP  60
   61 VYNKTHMICL EMPSGAGDVI VSSYSEINEN EYLDPRTAQV AIVDHVKQIC TKVRPANDEE 120
  121 LPSLYIEEYR YALDAEIQRY VSESYPKGMS AVNCVKGKDN EGPGSDFELV VIITAMRLSP 180
  181 QNFCNGSWRS VWNIDFQDES QVLDIKGKLQ VGAHYFEEGN VELDAKKDFQ DSTIFQSADD 240
  241 CAIAIANIIR HHETEYLASL EVAYSKLPDN TFKDLRRKLP VTRTLFPWQN TLQFSLTREV 300
  301 EKELGLGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 124.0
Match: 1iznA
Description: Capz alpha-1 subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
actin binding 6.56144513012007 bayes_pls_golite062009
actin filament binding 5.39928513902709 bayes_pls_golite062009
cytoskeletal protein binding 5.10504476256679 bayes_pls_golite062009
binding 2.03345990933192 bayes_pls_golite062009
protein binding 1.31870344025745 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle