| Protein: | AP180_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 653 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP180_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
379.0 | [0..16] | [653..2] |
|
|
379.0 | [0..16] | [653..2] |
|
|
377.0 | [0..16] | [653..2] |
|
|
375.0 | [0..16] | [652..2] |
|
Region A: Residues: [1-336] |
1 11 21 31 41 51
| | | | | |
1 MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI 60
61 LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR IFQDGDPYFP REVLHAMKRG 120
121 AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS 180
181 TTRSRFNPKA GIKSHEPAVR DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL 240
241 YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI 300
301 GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASS
|
| Detection Method: |  |
| Confidence: | 93.69897 |
| Match: | 1hf8A |
| Description: | Clathrin assembly lymphoid myeloid leukaemia protein, Calm |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [337-419] |
1 11 21 31 41 51
| | | | | |
1 GLYPSPNSFL PPPPSSKDSA VSSSLDFGDS TIDTSERYSD YGSFRSTSLE DLMSRTEAGT 60
61 SSPPMSCHSE PYGGGRDDPN GNN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [420-653] |
1 11 21 31 41 51
| | | | | |
1 FDTVSTKSLP NNPSVSASNL ILDLLSLDDV SNTAEAEDVE DKKKQDDSKA ETFDPWEALM 60
61 LRDDPKKKIE TIEEEPSTAE DHQRDSGNWL LALEETATQV QGNNSMAIVP FGLDDPMPAF 120
121 QAATDQYNPF LEEPVAQLAT AGEPMITFGG LALTGFQPEP TFQVNVPDDF EPSSTPTFKA 180
181 TETLPMKCDP FTTFESFGFG ETFSENGGVN QQSVLQEQQI WLQNQKKIIA KHLS
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
