YRC Public Data Repository - Protein Structure Prediction

Protein:	RPF2_ARATH
Organism:	Arabidopsis thaliana
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPF2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7670547 - gi\|7670547\|dbj\|BAA95117.1\| unnamed protein product [Mus musculus]	312.0	[0..3]	[312..6]
gi\|165970868, gi... - gi\|27705690\|ref\|XP_215404.1\| PREDICTED: similar to brix domain containing 1 [Rattus norvegicus], gi\|...	310.0	[0..3]	[312..6]
gi\|109073017 - gi\|109073017\|ref\|XP_001087115.1\| PREDICTED: brix domain containing 1 [Macaca mulatta]	307.0	[0..3]	[312..6]
gi\|114608888 - gi\|114608888\|ref\|XP_001156493.1\| PREDICTED: brix domain containing 1 isoform 2 [Pan troglodytes] RPF2 - ribosome production factor 2 homolog (S. cerevisiae)	305.0	[0..3]	[312..6]
gi\|148223607, gi... - gi\|28461332\|gb\|AAH46945.1\| Bxdc1-prov protein [Xenopus laevis], gi\|148223607\|ref\|NP_001080306.1\| bri...	305.0	[0..3]	[312..6]
RPF2_BOVIN - Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1	302.0	[0..3]	[312..6]
gi\|73973774 - gi\|73973774\|ref\|XP_854452.1\| PREDICTED: similar to Brix domain containing protein 1 isoform 2 [Canis...	300.0	[0..3]	[312..6]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY  60
   61 SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [101-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK  60
   61 HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT HCALKLKKSG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [211-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI  60
   61 YMPDQKLKEM KLFDKSKGSK RERKDAKLKH KEETVAKKMK VSSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits