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View Structure Prediction Details

Protein: BCB1_ARATH
Organism: Arabidopsis thaliana
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7485901 - gi|7485901|pir||T04605 hypothetical protein F20O9.30 - Arabidopsis thaliana
195.0 [0..7] [193..11]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVFKTVTF LVLVFAAVVV FAEDYDVGDD TEWTRPMDPE FYTTWATGKT FRVGDELEFD  60
   61 FAAGRHDVAV VSEAAFENCE KEKPISHMTV PPVKIMLNTT GPQYFICTVG DHCRFGQKLS 120
  121 ITVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.0
Match: 1x9rA
Description: Umecyanin from Horse Raddish- Crystal Structure of the oxidised form
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAGATGGATP GAGATPAPGS TPSTGGTTPP TAGGTTTPSG SSGTTTPAGN AASSLGGATF  60
   61 LVAFVSAVVA LF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle