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View Structure Prediction Details

Protein: AFC3_ARATH
Organism: Arabidopsis thaliana
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AFC3_ARATH.

Description E-value Query
Range
Subject
Range
gi|110738363 - gi|110738363|dbj|BAF01108.1| protein kinase [Arabidopsis thaliana]
327.0 [0..1] [400..1]

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Predicted Domain #1
Region A:
Residues: [1-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIANGFESMD KERVRKRPRM TWDEAPAEPE AKRAVIKGHG SDGRILSPPL RDDDRDGHYV  60
   61 FSLRDNLTPR YKILSKMGEG TFGRVLECWD RDTKEYVAIK IIRSIKKYRD AAMIEIDVLQ 120
  121 KLVKSDKGRT RCVQMKNWFD YRNHICIVFE KLGPSLFDFL KRNKYSAFPL ALVRDFGCQL 180
  181 LESVAYMHEL QLVHTDLKPE NILLVSSENV KLPDNKRSAA NETHFRCLPK SSAIKLIDFG 240
  241 STVCDNRIHH SIVQTRHYRS PEVILGLGWS YQCDLWSIGC ILFELCTGEA LFQTHDNLEH 300
  301 LAMMERALGP LPEHMTRKAS RGAEKYFRRG CRLNWPEGAN SRESIRAVKR LDRLKDMVSK 360
  361 HVDNTRSRFA DLLYGLLAYD PSERLTANEA LDHPFFKSSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.522879
Match: 1z57A
Description: Crystal structure of human CLK1 in complex with 10Z-Hymenialdisine
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle