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View Structure Prediction Details

Protein: hta2
Organism: Schizosaccharomyces pombe
Length: 131 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hta2.

Description E-value Query
Range
Subject
Range
gi|68432331 - gi|68432331|ref|XP_690287.1| PREDICTED: similar to ReO_6 [Danio rerio]
191.0 [0..1] [128..288]
gi|76612869 - gi|76612869|ref|XP_871733.1| PREDICTED: similar to histone H2A [Bos taurus]
175.0 [0..1] [127..61]
gi|74004252 - gi|74004252|ref|XP_545426.2| PREDICTED: similar to Histone H2A.l (H2A/l) [Canis familiaris]
174.0 [0..1] [124..50]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGKSGGKA AVAKSAQSRS AKAGLAFPVG RVHRLLRKGN YAQRVGAGAP VYLAAVLEYL  60
   61 AAEILELAGN AARDNKKTRI IPRHLQLAIR NDEELNKLLG HVTIAQGGVV PNINAHLLPK 120
  121 QSGKGKPSQE L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.045757
Match: 1eqzA
Description: Histone H2A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle