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View Structure Prediction Details

Protein: cyc1
Organism: Schizosaccharomyces pombe
Length: 109 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyc1.

Description E-value Query
Range
Subject
Range
gi|108879930, gi... - gi|94468578|gb|ABF18138.1| mitochondrial cytochrome c [Aedes aegypti], gi|157106248|ref|XP_001649238...
152.0 [0..1] [108..1]
gi|30178199, gi|... - gi|31202411|ref|XP_310154.1| AGAP009537-PA [Anopheles gambiae str. PEST], gi|30178199|gb|EAA05914.2|...
AGAP009537-PA - cytochrome c|protein_coding|3R:35606586:35606912:1|gene:AGAP009537
152.0 [0..1] [107..1]
gi|89272026 - gi|89272026|emb|CAJ83237.1| cytochrome c, somatic [Xenopus tropicalis]
152.0 [0..6] [109..9]
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2
152.0 [0..6] [108..1]
CYC_SCHGR - (P00040) Cytochrome c
150.0 [0..4] [107..3]
CYC_MANSE - Cytochrome c OS=Manduca sexta PE=1 SV=2
150.0 [0..1] [107..1]
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3
150.0 [0..6] [108..2]
gi|47157060 - gi|47157060|gb|AAT12410.1| mitochondrial cytochrome C [Apis mellifera ligustica]
CYC_APIME - Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2
149.0 [0..1] [107..1]
CYC_HIPAM - (P00007) Cytochrome c
149.0 [0..6] [109..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYAPGDEKK GASLFKTRCA QCHTVEKGGA NKVGPNLHGV FGRKTGQAEG FSYTEANRDK  60
   61 GITWDEETLF AYLENPKKYI PGTKMAFAGF KKPADRNNVI TYLKKATSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 2b4zA
Description: Crystal structure of cytochrome C from bovine heart at 1.5 A resolution.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle