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View Structure Prediction Details

Protein: agef-1
Organism: Caenorhabditis elegans
Length: 551 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for agef-1.

Description E-value Query
Range
Subject
Range
agef-1 - status:Partially_confirmed UniProt:B2FDA3 protein_id:CAQ48410.1
462.0 [0..1] [538..1]

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Predicted Domain #1
Region A:
Residues: [1-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELSNGPKK SIGNMFLRSG IEKILADRDI KRKENLQLKK ACESALEELK AAEEQDASPS  60
   61 SNGEHLPDAG GTAVEADRYF LPFELACNSK SPKIVITALD CLQKLIAYGH LTGRGADISN 120
  121 PERKLIDRIV EAICAPFLGQ GTDETVLLQL IKAVLAVVLS THCEVHGASL ILAVRTCFNI 180
  181 YLTSKSPINQ ATAKGTLTQV INTVFGNMEK FGNIKDDETI VREVVEVLVS NTISNEVSDE 240
  241 TSEAGGTHRQ NGSTMGESEA PLDDQFTFMN AYQKDAFLVF RALCILAQKE EGGASNEMSL 300
  301 RSKLLALEML LLVLQNSSSI LQSSQPCIIV IKRTLCMALT RNAVSNNIQV FEKSLAIFVE 360
  361 LLDKFKTHLK ASIEVFFNSV ILPMLDSNTC AFEQKWIVLN TIGKILANPQ SVVDMFVNYD 420
  421 CDMTSPNLFK SIVEVVSKTT RTTINENAPP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 2ot8A
Description: No description for 2ot8A was found.

Predicted Domain #2
Region A:
Residues: [451-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQKEKERAMR LLGLSCLTDL LQCLVDWWQV CEVQKITSGT RIDLKRRRFF YGNIGKNPEK  60
   61 RTFIINFHVK ILEIEIKIDE NREFRVSKNC VPTSVRDHAY F

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle