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View Structure Prediction Details

Protein: CE36053
Organism: Caenorhabditis elegans
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36053.

Description E-value Query
Range
Subject
Range
gi|187032507, gi... - gi|39583926|emb|CAE64016.1| Hypothetical protein CBG08611 [Caenorhabditis briggsae], gi|187032507|em...
gi|157762134 - gi|157762134|ref|XP_001673409.1| Hypothetical protein CBG08611 [Caenorhabditis briggsae AF16]
161.0 [0..1] [125..86]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEAIPFLPV PVAITCLLFN IFIPGSGTIL SGFFALCMGQ PRINLKEGRK LITLVVNLLV  60
   61 GISQFFTITF LFVGWFWSIA W

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGLLIIHSMQ YREALQQRRQ EAVATAAIEA LTKDSILHRR DVKTLLCLRS GKNGPGRFAE  60
   61 LIDIFSLLEN QQMIQKYMYL LNYVPFLSAS VKYNIQLLHD IMEF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.5
Match: 1xiuA
Description: Crystal structure of the agonist-bound ligand-binding domain of Biomphalaria glabrata RXR
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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