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View Structure Prediction Details

Protein: alp-1
Organism: Caenorhabditis elegans
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp-1.

Description E-value Query
Range
Subject
Range
alp-1 - status:Confirmed UniProt:Q2XN05 protein_id:CAJ43909.1
159.0 [0..1] [397..1]

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Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERVTVRMAR SDRRTPWGFG VTEAPDGAVL IVNVIGGSLA DRAGLRNGDV VDRLEDLDNL  60
   61 DINAVDRLLV TAHEKIELIV TRQPSGAATR IWRPEVTENT GPGQDQTPYR VNLQHSSDTR 120
  121 PPQGFNNSAL PFETDQRVKH MQYNSPLGIY SDKSAAEQYV QQTQGLGDNS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1z87A
Description: solution structure of the split PH-PDZ Supramodule of alpha-Syntrophin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [171-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GARAAAQRQD EPAYLRSETL RLLKEQEHGS AGGAGTTLSN HPNPSGLPVC FMCTRPILGV  60
   61 MARAAGKNLH GDCLSCATCG NSLRNVGHHF IEDKFYCDIH GTQRKHGGRP GMDPNIFVKS 120
  121 SPTAAQPVHI QDSPRAAYHP QVNTARPVSV SPAPSAGSKT VTTHYHTPKT QGILSPGQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #3
Region A:
Residues: [350-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVPTAAFGAD LSKSVTYGGG VGPGGTHYDS NRLSPAPSQY STQSRNQSQQ HYQQHVVQAP  60
   61 PPVPSNPPPS NVRSWW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle