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View Structure Prediction Details

Protein: CE35917
Organism: Caenorhabditis elegans
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35917.

Description E-value Query
Range
Subject
Range
COX10_MOUSE - Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10 PE=2 SV=1
244.0 [0..2] [351..61]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRHILMCS RVGFTPSTSQ AVFHTSAVNS VLPRAKPLDE EMPLASPKKP RPDTQILDLS  60
   61 GKRHKKDIDI IV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDQYLQQWYK METKNLAADY LALCKSKLSL FVASTATCGV LMAPVPVAAD SLIAATVGTF  60
   61 LLSSAANACN QLLEAPYDAQ MRRTQTRVLV VHRFSPLHAF TFAGVTGLTG IGLLAYYANP 120
  121 LAAALGALNW FIYAGVYTPM KRSHIGCTWA GAVVGAIPPL MGYAAATGYL DPAAWCLATI 180
  181 LFSW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [257-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFPHFNGLSW NLRGDYSKAG YRVMCVTNER LCRVTSLRHS VALLGLCSIA APLTDLTTLT  60
   61 FAIDSLPVNA YLVYLSYKFY KAPDAKNSRK LFFYSLLHLP LVMLLMGISN YGRNEQQKEH 120
  121 ISDRISNGYN KMVDSVKSFS L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle