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View Structure Prediction Details

Protein: CE35858
Organism: Caenorhabditis elegans
Length: 619 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35858.

Description E-value Query
Range
Subject
Range
CE32376 - status:Partially_confirmed UniProt:Q8I0I3 protein_id:CAD56576.1
380.0 [0..1] [581..1]

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Predicted Domain #1
Region A:
Residues: [1-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSLPNYD RTSDDVDASK EVVDTPIQTI SSSHVSFQIT TDPVPSMDYL SIHEDDTSMS  60
   61 SSERTIERGF SRYGRKRSSV RMLLDEVNMT DRKTSWMDTE HRVILNVGGI RHETYSHVLK 120
  121 KIPATRLSRL TPNLANYDPV LNEYFFDRHP GVFSMILNYY RTGKLHYPTN VCGPLFEEEL 180
  181 EFWGLDANQV EPCCWMTYTQ HRDTQDTLAV IESLDLDGDP PTQEEIAKKF GWEDDYYTGN 240
  241 MSQWQRLKPR VWALFDEPWS SKYARVISVV NIIFVIISIV CFCLKTHPSF RIPDIDISTT 300
  301 MGNFSAPLNG VQMNNIYVGK TATRAHPSFF YVELLSNIWF SGEFLTRMVF CPNVATFLRT 360
  361 PVNLIDFIAT VSFYIDWALD RTLSGSNRDS VEFFSIIRIL RLFKLTQHST GLKILIQTFK 420
  421 ASAQELFLLV FFVLLGIVIF AALVYYAERV EHNEENQFSS IPVGLWWAVI TICTIGFGDL 480
  481 VPQTSLGRLV GSVCALMGVL TIALPVPVIV SNFAMFYSHA QARSKLPKKR RRVLQPHEIK 540
  541 PVVGRSTTAV MISALTQRGP VSGGGSNPSD GGPLSAFSNN TPLLVCPPDG STKPKKLSQN 600
  601 KNGGTTPIQN NGSKASKLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle