YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: sdf-9
Organism: Caenorhabditis elegans
Length: 345 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdf-9.

Description E-value Query
Range
Subject
Range
h0012206 - null
gi|104487297 - gi|104487297|ref|NP_570924.2| protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor...
355.0 [0..3] [342..1351]

Back

Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKYSIRSNI VHKLDDNQPL LSERVTARLE AVNRNRVVKI VPQHRYNVRL TPSMLNRDGY  60
   61 INASLMEFSD VGQKYILTGI PSEDKVFAFW QMVLEQRSPT IIQFADNVEE KLEHYDKYFP 120
  121 DKGDVWSYGH LQVERKSYAI HQGNFHTRNF ILRKGNETHR VLHFTVFGWT ETTTPIMQDF 180
  181 LALRKVMKDT GALNMINPAS ALFRSTMRRY IHTPPSFAPI IQSARGSSRA GAFVVIDLLI 240
  241 RMIDGKKTNL YSVEDLIVKC KHMRIHCVPV ALHHSFIYEA VLDYLLRRNP RFQDFKEPLI 300
  301 AYSESCFVKW SSMDKEIEKF INTKTWFLNE SSRNKFLRSV MPPVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.09691
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle