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View Structure Prediction Details

Protein: CE35592
Organism: Caenorhabditis elegans
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35592.

Description E-value Query
Range
Subject
Range
gi|50754596 - gi|50754596|ref|XP_414437.1| PREDICTED: similar to cereblon; protein x 0001 [Gallus gallus]
335.0 [0..1] [391..17]

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Predicted Domain #1
Region A:
Residues: [1-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELIQDEDES ESEDFYDAED AEPQAMEGLN VDVTHRFDYA LQDNENRENY ENEARLTDYG  60
   61 TNWFPICGVS AVCFPGQQLP MKFHDDEREI YERLVSSARA NGFVVLFPLD IPECTSLPYI 120
  121 ATLSRVVQAN SNALSMELMG VYRCKVLKYN LGRGEAEVQL LPDVELPSLL PSFIPKYAIH 180
  181 LPAHEKRSIA TRINGYPFNA IRDVTESAVN ECVGLLSGML GDDTVRQAKD RGLTYFSYFA 240
  241 AKHI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1zboA
Description: Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [245-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSNRLTEYSL LKEDSANGRI VAALKYFKVF VGRCSRCRIP IFRNEHIMRL PDQTMTHVNA  60
   61 HGFVHKITLL SEIRNYDRAT PPSYEFTWFP EYAWIIIQCS RCHEHLGWEY ISMTREPRRF 120
  121 FGIQREGITF QNELQEGDTE ENWDHVPEFD NDDQEEEDDA MNFIRLILRR 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.958
Match: 1xm0A
Description: Solution NMR Structure of Methionine Sulfoxide Reductase B Using Minimal Constraint Strategy; Northeast Structural Genomics Target SR10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.0217566172727445 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle