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View Structure Prediction Details

Protein: lact-1
Organism: Caenorhabditis elegans
Length: 393 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lact-1.

Description E-value Query
Range
Subject
Range
gi|91683142, gi|... - gi|91976686|ref|YP_569345.1| beta-lactamase [Rhodopseudomonas palustris BisB5], gi|91683142|gb|ABE39...
259.0 [0..3] [392..15]

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Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGNNIGGFA QSEYDTVKTV FRENFEKGLE TAGASFAVYH NDKLLINLYG GLRNVDKKQP  60
   61 WVEDTTSVIF STTKSISAVI LAYCIDKNKE GINYETKISE IWPDFSNNGK ENITILDAAL 120
  121 HRAGLAYTEE VLEREDITKP AKISKFFEEA VPMTNGSDVL YHALTFGLLL DQIVRRIDEK 180
  181 RRGIAEILNE DFVHKYGIKN LSIGLKCENS NENVAKLTDL NNEEIERQGL LNPEALRKFI 240
  241 AGDNIHHQKL YSIFPWITTD DYNLVSNRLL PMPSNMGISN AEGLAHFHSL VANKQILSEN 300
  301 MYRLLKQPVL EHVYDHAIGY EENKGYGFQY TKNPKGQWIF GHSGFGGQNV RVDVTNGLTL 360
  361 AYVSNGMKIT DADMVEPWKN LIEETYRVFF HAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.522879
Match: 1y54A
Description: Crystal structure of the native class C beta-lactamase from Enterobacter cloacae 908R complexed with BRL42715
Matching Structure (courtesy of the PDB):

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