YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE35380
Organism: Caenorhabditis elegans
Length: 731 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35380.

Description E-value Query
Range
Subject
Range
gi|74000349 - gi|74000349|ref|XP_535453.2| PREDICTED: similar to protein disulfide isomerase-associated 3 precurso...
337.0 [0..129] [644..208]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEENDETNE PEGSKTPVER KEDSFEEESH SSQESSSEQQ SEAGDENKEE VEGSDEEPID  60
   61 EDVIAQAVAR RNTEKNRILR DCGVLLVATA ALAIMIYLLL TLLGLSMPSR PLVVSKGAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 2h8lA
Description: No description for 2h8lA was found.

Predicted Domain #2
Region A:
Residues: [120-639]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPFFHGVHRK LIQDNYDGTI RLSGNQTMSV ILLYSPYSIR SKWFREEYYT TARRLKKLHG  60
   61 NLAPYFGATN CFDQNSYCRR KYNLKQYPAM MAQNSALMGS VYNGPLDSVY VTRWLNRLQN 120
  121 GVFRLQSAQD LTTLSKNHDL LTILYFKIKT PPQKFQSASN FSKLAYHYLD GDPNTDRTIF 180
  181 CIVTDSQLAA QLQLHNEHDL VLVSSELKLL TTHYKGWVME NVHKDLVKFS QEAAMKNVEF 240
  241 LNLGRRFHST QLAEKFNQGS VLMYFTRDLN YGNAKYKMFR EIAQEYRTCP EKDFISVDSE 300
  301 TPDNFDLDCS TSLKGILCEA NNTLSFMMID SKIENALAAK YGADREDMVV AINSKQEITR 360
  361 YIKSNITRES INCLIRQHHN SADNSFVTES TEIITTKTET PKDIHADAVG ESSFVKFVDS 420
  421 TAELLLSRKI NVILFMGGIW HSASSSAIAP FHLVANHFKE SKNLIDFSIV DVSETKLPYN 480
  481 LNFDQLPKIL ITSADRSNTY MFLIKVVLFQ NSSEASNAKT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.39794
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [640-731]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVLLSIGLSW TYPEEFMINH TNIARFVLTR PGKIFGRLRW MDSCQGTCRK RAQREMRDDR  60
   61 LQLKRRLGRN VANSVRQRVL LGYYDRMLRM IS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle