YRC Public Data Repository - Protein Structure Prediction

Protein:	CE35352
Organism:	Caenorhabditis elegans
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35352.

Description	E-value	Query Range	Subject Range
gi\|78695248, gi\|... - gi\|78695248\|ref\|ZP_00859760.1\| similar to NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Bradyr...	136.0	[0..2]	[109..52]
gi\|110829209, gi... - gi\|121609762\|ref\|YP_997569.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Verminephrobact...	131.0	[0..2]	[109..24]
gi\|88910855 - gi\|88910855\|gb\|ABD58734.1\| NADH dehydrogenase subunit 3 [Catharacta skua]	131.0	[0..1]	[109..1]
gi\|37361564 - gi\|37361564\|gb\|AAQ91100.1\| NADH dehydrogenase subunit 3 [Acanthisitta chloris]	131.0	[0..1]	[109..1]
gi\|6714875 - gi\|6714875\|gb\|AAF26188.1\| NADH dehydrogenase subunit III [Scytalopus magellanicus]	130.0	[0..1]	[109..1]
gi\|89212930 - gi\|89212930\|gb\|ABD63935.1\| NADH dehydrogenase subunit 3 [Xanthomixis cinereiceps]	130.0	[0..1]	[109..1]
gi\|108767360, gi... - gi\|108767360\|ref\|YP_636090.1\| NADH dehydrogenase subunit 3 [Chondrostoma lemmingii], gi\|105873619\|gb...	130.0	[0..1]	[109..1]
gi\|56692435, gi\|... - gi\|56692435\|ref\|YP_163914.1\| NADH dehydrogenase subunit 3 [Anguilla dieffenbachii], gi\|56565394\|dbj\|...	130.0	[0..1]	[109..1]
NU3M_CARAU - NADH-ubiquinone oxidoreductase chain 3 OS=Carassius auratus GN=MT-ND3 PE=3 SV=1	130.0	[0..1]	[109..1]
NU3M_CYPCA - NADH-ubiquinone oxidoreductase chain 3 OS=Cyprinus carpio GN=MT-ND3 PE=3 SV=1	130.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLLMVLVF TLVLLFAFYL INFLLSIKDM GKNKISAFEC GFVSVGKIQN SFSIHFFIMM  60
   61 LMFVIFDLEI VMFLGILVSD LSSYISFLMM FIFILGGFYM EWWYGKLVWV I

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.49485
Match:	PF00507.10
Description:	No description for PF00507.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.959	N/A	N/A	a.29.16	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits