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View Structure Prediction Details

Protein: CE35346
Organism: Caenorhabditis elegans
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35346.

Description E-value Query
Range
Subject
Range
gi|629605, gi|515963 - pir||S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...
195.0 [0..17] [199..226]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQVYFLDIF MFVFVLQFLF YFKESMLNTL VKKFLNSLVG VFSYTNTLPL SSVISIFTFI  60
   61 VLLTCCFGGY FTYSFCPCGM VEFTFVYAAV AWLSTLLTFI SSEKFSVYMS KPGDTYLKTL 120
  121 SMLLIEIVSE FSRPLALTVR LTVNITVGHL VSMMLYQGLE LSMGDQYIWL SILAIMMECF 180
  181 VFFIQSYIFS RLIFLYLNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1c17M
Description: F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle