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View Structure Prediction Details

Protein: apb-1
Organism: Caenorhabditis elegans
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apb-1.

Description E-value Query
Range
Subject
Range
gi|46559756, gi|... - gi|46559756|ref|NP_956213.2| adaptor-related protein complex 2, beta 1 subunit [Danio rerio], gi|463...
232.0 [0..1] [224..1]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSKYFTTT KKGEIFELKN ELNSDKKEKK KEAVKKVIAS MTVGKDVSAL FPDVVNCMQT  60
   61 DNVELKKLVY LYLMNYAKSQ PDLAIMAVNT FVKVAIKNDI NAFYFATTVP LLAYFREDGQ 120
  121 MEKREFLEEW KSIPEQNEQQ FTLQNTHNMN ADAICTKLQQ NNIHTVARRQ VDNQQLLYHS 180
  181 VKYTNNLNVL SELKVNSQTT SITLSLKSKN LMAIANINEV FQALLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 1gw5B
Description: Adaptin beta subunit N-terminal fragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle