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View Structure Prediction Details

Protein: CE34917
Organism: Caenorhabditis elegans
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34917.

Description E-value Query
Range
Subject
Range
gi|39592668, gi|... - gi|39592668|emb|CAE62282.1| Hypothetical protein CBG06341 [Caenorhabditis briggsae], gi|187033938|em...
500.0 [0..7] [365..43]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWQEFTER DVSLFTENVI RSLINTKYNV ICHIEDYTPP QFDSFLQLSA CYNIGEKTED  60
   61 EVINSDGIRW SKKKDSLGSE MKPRKNTISV DGRTFRRINC SSPPPATNLF KKYMAIEEAT 120
  121 KLCWILFLGS SHDVIDYTSL KV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [143-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARKKLSKEEA LMIRKMLEGR TVLMVYQMLG GKYSKRQIKD QQRNVLTTVK LNRGPR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [199-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVTNPADLCD LSRMFSHAYH SSHRNSIRFI YFNKSMLGLF LKSCPTYTEI TTYRNRMDGI  60
   61 ENWRTADLNK HLADCKVYTC GGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [282-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTRVASIIEL DTTFGLSNGY ISVTTGFIPV FRTRQHTKSS PSKLRHVVLG FMFHSSKHKS  60
   61 HFEDFSGRLN EILQELDPKK IKKIQL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle