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View Structure Prediction Details

Protein: mdt-4
Organism: Caenorhabditis elegans
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdt-4.

Description E-value Query
Range
Subject
Range
gi|39596779, gi|... - gi|39596779|emb|CAE59006.1| Hypothetical protein CBG02282 [Caenorhabditis briggsae], gi|187037542|em...
gi|157752342 - gi|157752342|ref|XP_001679883.1| Hypothetical protein CBG02282 [Caenorhabditis briggsae AF16]
427.0 [0..1] [329..1]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETDERSLR DLLLESADDL EHIVKMIVDT LINRDKSVML KNGETVTNII KLFDSKQDSI  60
   61 KTLLKRVPEF QEREQLIRTL EAHVEKRDEV IQQLETNLKS CEVALTRSCF HANQKLKQMK 120
  121 EAELRPVNSE MLIKLAHQIS KHNSVSAPLT WQMGDP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [157-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRPFPQEHEF RAGHLLNSKV QSTGPQLLPG KNVAQRPLIT SPSASSSNGG TAPIRTVGTP  60
   61 LINSAPTGDF SPRTGFGTDE PPPIQQQVLR GATPNEKQWQ NPGVSGATST QSPYNRVSQS 120
  121 PSSSPNVKLK ITGLPNRPGG IDQVQDVRDV EQMSSDSSNS SDSSDDEGAS KKTGSSNK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle