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View Structure Prediction Details

Protein: CE34418
Organism: Caenorhabditis elegans
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34418.

Description E-value Query
Range
Subject
Range
gi|157758699 - gi|157758699|ref|XP_001671693.1| Hypothetical protein CBG08424 [Caenorhabditis briggsae AF16]
gi|187032775, gi... - gi|39583758|emb|CAE63862.1| Hypothetical protein CBG08424 [Caenorhabditis briggsae], gi|187032775|em...
207.0 [0..1] [254..1]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVIVVNGDS DFDRKFSAGN GKAVFVDFTA SWCGPCQYIA PIFSDLANQY KGSVFLKVDV  60
   61 DECRGTAATY GVNAMPTFIA FVNGQKKATI QGADESGLRS MVAKYASTSA A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.221849
Match: 2cvkA
Description: Crystal Structure of Thermus thermophilus Thioredoxin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [112-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSGTGQRLSG STTGSSSSTS SSAPPRASGA APPPAGPNPL EPVFRIIETI NERLQGFGIS  60
   61 GVNFAGFQLQ PFHLLLAIAL LIIFGPFGLL IALAVCFFTQ PRGGGPAPGA PRAGGSGAGG 120
  121 APRPPPPAGP RAFGGSGQRL GGN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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