YRC Public Data Repository - Protein Structure Prediction

Protein:	CE34083
Organism:	Caenorhabditis elegans
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34083.

Description	E-value	Query Range	Subject Range
gi\|115955498, gi... - gi\|72156901\|ref\|XP_793771.1\| PREDICTED: similar to HIU hydrolase [Strongylocentrotus purpuratus], gi...	194.0	[0..12]	[135..24]
gi\|169889445, gi... - gi\|170081610\|ref\|YP_001730930.1\| hypothetical protein ECDH10B_2113 [Escherichia coli str. K-12 subst... EG14046 - hydroxyisourate hydrolase / Hydroxyisourate hydrolase; HIU hydrolase, HIUHase; periplasmic transthyr... YEDX_ECOLI - Transthyretin-like protein precursor - Escherichia coli EG14046 - hydroxyisourate hydrolase / Hydroxyisourate hydrolase; HIU hydrolase, HIUHase; periplasmic transthyr... gi\|89108798, gi\|... - gi\|89108798\|ref\|AP_002578.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238860499, gi... - gi\|238901171\|ref\|YP_002926967.1\| hypothetical protein BWG_1771 [Escherichia coli BW2952], gi\|2388604... gi\|253773084, gi... - gi\|253773084\|ref\|YP_003035915.1\| hydroxyisourate hydrolase [Escherichia coli BL21(DE3)], gi\|25332412...	180.0	[0..1]	[135..1]
HIUH_PSEAE, YF18... - (Q9I3J5) Hypothetical transthyretin-like protein PA1518, Putative transthyretin-like protein PA1518 ... gi\|126193245, gi... - gi\|254239867\|ref\|ZP_04933189.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|218772834, gi... - gi\|218892606\|ref\|YP_002441475.1\| putative transthyretin family protein [Pseudomonas aeruginosa LESB5... HIUH_PSEAE - 5-hydroxyisourate hydrolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG...	178.0	[0..15]	[135..1]
gi\|49077538 - gi\|49077538\|gb\|AAT49690.1\| PA1518 [synthetic construct]	178.0	[0..15]	[135..1]
gi\|218369456, gi... - gi\|218699470\|ref\|YP_002407099.1\| hypothetical protein ECIAI39_1087 [Escherichia coli IAI39], gi\|2183... gi\|191173296, gi... - gi\|191173296\|ref\|ZP_03034826.1\| transthyretin family protein [Escherichia coli F11], gi\|190906413\|gb... gi\|194418125, gi... - gi\|194433696\|ref\|ZP_03065972.1\| transthyretin family protein [Shigella dysenteriae 1012], gi\|1944181... gi\|169754628, gi... - gi\|170019700\|ref\|YP_001724654.1\| hydroxyisourate hydrolase [Escherichia coli ATCC 8739], gi\|16975462... gi\|191169246, gi... - gi\|191169246\|ref\|ZP_03030999.1\| transthyretin family protein [Escherichia coli B7A], gi\|190900724\|gb... gi\|124498191, gi... - gi\|124532078\|ref\|ZP_01702092.1\| Transthyretin [Escherichia coli B], gi\|124498191\|gb\|EAY45714.1\| Tran... gi\|24113345, gi\|... - gi\|24113345\|ref\|NP_707855.1\| hypothetical protein SF2017 [Shigella flexneri 2a str. 301], gi\|2405235... gi\|26248240, gi\|... - gi\|26248240\|ref\|NP_754280.1\| transthyretin-like protein precursor [Escherichia coli CFT073], gi\|2610... gi\|30041660, gi\|... - gi\|30063408\|ref\|NP_837579.1\| hypothetical protein S2114 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|157161438, gi... - gi\|157161438\|ref\|YP_001458756.1\| transthyretin family protein [Escherichia coli HS], gi\|157067118\|gb... gi\|254288762, gi... - gi\|254288762\|ref\|YP_003054510.1\| hypothetical protein ECD_01885 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973875, gi... - gi\|254161974\|ref\|YP_003045082.1\| hypothetical protein ECB_01885 [Escherichia coli B str. REL606], gi... gi\|110615488, gi... - gi\|110805940\|ref\|YP_689460.1\| hypothetical protein SFV_2015 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|251785361, gi... - gi\|251785361\|ref\|YP_002999665.1\| hypothetical protein B21_01875 [Escherichia coli BL21], gi\|24237763... gi\|110642075, gi... - gi\|110642075\|ref\|YP_669805.1\| transthyretin-like protein precursor [Escherichia coli 536], gi\|110343... gi\|226900685, gi... - gi\|237705928\|ref\|ZP_04536409.1\| transthyretin family protein [Escherichia sp. 3_2_53FAA], gi\|2269006...	177.0	[0..1]	[135..1]
gi\|115513230, gi... - gi\|117624106\|ref\|YP_853019.1\| hypothetical protein APECO1_1005 [Escherichia coli APEC O1], gi\|115513... gi\|218352307, gi... - gi\|218695575\|ref\|YP_002403242.1\| hypothetical protein EC55989_2196 [Escherichia coli 55989], gi\|2183... gi\|218432558, gi... - gi\|218705461\|ref\|YP_002412980.1\| hypothetical protein ECUMN_2261 [Escherichia coli UMN026], gi\|21843... gi\|15802403, gi\|... - gi\|15802403\|ref\|NP_288429.1\| hypothetical protein Z3062 [Escherichia coli O157:H7 EDL933], gi\|125160... gi\|209766620, gi... - pir\|\|D90967 hypothetical protein ECs2708 [imported] - Escherichia coli (strain O157:H7, substrain R... HIUH_ECO57 - 5-hydroxyisourate hydrolase OS=Escherichia coli O157:H7 GN=hiuH PE=3 SV=1 gi\|168771625, gi... - gi\|189359667\|gb\|EDU78086.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|187767097, gi... - gi\|187767097\|gb\|EDU30941.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168783369, gi... - gi\|188999252\|gb\|EDU68238.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168789332, gi... - gi\|189371019\|gb\|EDU89435.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|168752197, gi... - gi\|188013899\|gb\|EDU52021.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|168757601, gi... - gi\|189355389\|gb\|EDU73808.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|189366021, gi... - gi\|189366021\|gb\|EDU84437.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|74312509, gi\|... - gi\|74312509\|ref\|YP_310928.1\| hypothetical protein SSON_2029 [Shigella sonnei Ss046], gi\|73855986\|gb\|... gi\|91211187, gi\|... - gi\|91211187\|ref\|YP_541173.1\| hypothetical protein UTI89_C2169 [Escherichia coli UTI89], gi\|91072761\|... gi\|13362176, gi\|... - gi\|15831962\|ref\|NP_310735.1\| hypothetical protein ECs2708 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254793622, gi... - gi\|254793622\|ref\|YP_003078459.1\| hypothetical protein ECSP_2576 [Escherichia coli O157:H7 str. TW143... gi\|217318008, gi... - gi\|217328661\|ref\|ZP_03444742.1\| transthyretin family protein [Escherichia coli O157:H7 str. TW14588]... gi\|218554548, gi... - gi\|218554548\|ref\|YP_002387461.1\| hypothetical protein ECIAI1_2050 [Escherichia coli IAI1], gi\|218361... gi\|218558824, gi... - gi\|218558824\|ref\|YP_002391737.1\| hypothetical protein ECS88_2022 [Escherichia coli S88], gi\|21836559... gi\|218427527, gi... - gi\|218689963\|ref\|YP_002398175.1\| hypothetical protein ECED1_2235 [Escherichia coli ED1a], gi\|2184275... gi\|208731275, gi... - gi\|208816932\|ref\|ZP_03258052.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4045],... gi\|208738353, gi... - gi\|208818230\|ref\|ZP_03258550.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4042],... gi\|209159526, gi... - gi\|209398126\|ref\|YP_002271083.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4115]... gi\|209912649, gi... - gi\|209919390\|ref\|YP_002293474.1\| hypothetical protein ECSE_2199 [Escherichia coli SE11], gi\|20991264... gi\|193071316, gi... - gi\|193071316\|ref\|ZP_03052234.1\| transthyretin family protein [Escherichia coli E110019], gi\|19295535... gi\|194411590, gi... - gi\|194430370\|ref\|ZP_03062858.1\| transthyretin family protein [Escherichia coli B171], gi\|194411590\|g... gi\|157077092, gi... - gi\|157155062\|ref\|YP_001463270.1\| transthyretin family protein [Escherichia coli E24377A], gi\|1570770... gi\|195940657 - gi\|195940657\|ref\|ZP_03086039.1\| hypothetical protein EscherichcoliO157_30408 [Escherichia coli O157:... gi\|208810193, gi... - gi\|208810193\|ref\|ZP_03252069.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC4206],... gi\|168801747, gi... - gi\|189376142\|gb\|EDU94558.1\| transthyretin family protein [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|170680340, gi... - gi\|170680340\|ref\|YP_001743276.1\| transthyretin family protein [Escherichia coli SMS-3-5], gi\|1705180... gi\|188493867, gi... - gi\|188493867\|ref\|ZP_03001137.1\| transthyretin family protein [Escherichia coli 53638], gi\|188489066\|... gi\|192925719, gi... - gi\|193066644\|ref\|ZP_03047679.1\| transthyretin family protein [Escherichia coli E22], gi\|192925719\|gb...	177.0	[0..1]	[135..1]
gi\|194545599, gi... - gi\|254234614\|ref\|ZP_04927937.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|116049462, gi... - gi\|116049462\|ref\|YP_791735.1\| putative transthyretin family protein [Pseudomonas aeruginosa UCBPP-PA...	177.0	[0..15]	[135..1]
gi\|70733704, gi\|... - gi\|70733704\|ref\|YP_257344.1\| transthyretin family protein [Pseudomonas fluorescens Pf-5], gi\|6834800...	176.0	[0..1]	[135..1]
gi\|77380431, gi\|... - gi\|77456428\|ref\|YP_345933.1\| transthyretin [Pseudomonas fluorescens Pf0-1], gi\|77380431\|gb\|ABA71944....	176.0	[0..1]	[135..1]
TTHY_ERIEU - Transthyretin OS=Erinaceus europaeus GN=TTR PE=2 SV=1	175.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFSLFFAL TATLMTITES AVPTASISAH VLDISGGSPA GGVQILAYIQ QNDDWTKIGS  60
   61 EFTQDNGRVD WVSPDFTLIP GTYRLVYITE PYYKAKNVES FYPYVEVVFN IRDATQHYHV 120
  121 PLTLSPWGYS TYRGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2iglA
Description:	No description for 2iglA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits