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View Structure Prediction Details

Protein: ifc-2
Organism: Caenorhabditis elegans
Length: 685 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ifc-2.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
280.0 [0..2] [682..1109]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTSTPFST DDERYSGYTN SAMSPPLQKQ LIQEVSLSYS APYTSTVKPS RHDLPLAFSP  60
   61 YSLDSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEDLHSHTYS QLSNRSNGNK VESAERIYTA SRKETEFPAK ADPIPYFSAQ SAIKAGRESP  60
   61 SYTTRSTPTP RQTPISFDQA STARLDSGLS QNLIVSESTT FEELTTITTS NNRTTRKKEI 120
  121 KTEMPTVNAL TKQFEISSQQ EKVVPLKPRK SSNVDYNGNG NSRSQNGTYT PNRSAIVYSP 180
  181 GGILTTTIVD IEP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [260-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARFGRRTEEY KIQEEYIVQR YDNGSSPNYQ RQEQGYQQQQ QHRSREYKTH RQEKQENYNQ  60
   61 RSYSATENRE VDAPVDTSPI DVVKNVIDRW ETKIGGTTTR FYASDQQLRS VSRV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [374-538]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMNDNVPRSA QEKIIVHQRS ESQPTERVIP ISPLPHRVEP TRTTQSGGLL QTYEELKTVV  60
   61 VKQSSDQTPQ KIVPRAQSPV TSPVFKETIL SPPPIPTPSP TSDIAEEVLR TDETTQHTAI 120
  121 TMHSIVTKEV KQEAKEKINS VTDNAEMKEK VVEIAKNVEY EWEKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [539-685]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLTPTPTPIP PQQQEVKQEE LKVENKIEND QNEVHLHKFL DRDYRIKTYE EYSTTKRLRD  60
   61 RSQPPERPPT SYSSYSDRSR SIDRTYERRV LGSGMSRTYS EGNLNFAGLS FKFESSYNML 120
  121 TVPLSQFLEH QNQTFGTVHF IHYFLCT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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