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View Structure Prediction Details

Protein: CE33976
Organism: Caenorhabditis elegans
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33976.

Description E-value Query
Range
Subject
Range
gi|91078244 - gi|91078244|ref|XP_970364.1| PREDICTED: similar to CG10960-PB, isoform B [Tribolium castaneum]
281.0 [0..2] [449..682]

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Predicted Domain #1
Region A:
Residues: [1-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRDLFTVVQ LGASFAFIFS AFNSQGLIEV AVLRKKAETS PDTGITANSG YYSLSIIYFF  60
   61 FTFFNIVIPS IVQKLGAKWS QIIGASGYLF FMLTFLYLNV WLLYFGSAVL GAGAALLWAG 120
  121 NGCYLVEISR RNKMERNSGI MWAMLQSSLI TGGIFLIYVL RSGDLSNSFT FIYMVFSSVI 180
  181 AIGIVVLLFL PNNPAQYGSQ NEDIESSEDP LILPETENDV TLPASSVSEQ LRSTIALLLT 240
  241 PNMLCLAVLF VYSGLEMTFY TGVYTSCLSA TLPLKIFSDL VIPYNALSIG AGQIAGGVVT 300
  301 GPLMKILRMR SQHIIYLAFV GHLTSFILAY LCLPYDSTVH STDASTYLAP TLNLTLIISF 360
  361 LLGVSDAFWQ TQIYVTIGQV FKEDPVNAFA IFKFFQSMAA CVSFFYSSFL FLPSQLLILT 420
  421 IGCVASTFFF LKVRLAIQVP IVELVRDREI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle