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View Structure Prediction Details

Protein: lst-3
Organism: Caenorhabditis elegans
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lst-3.

Description E-value Query
Range
Subject
Range
lst-3 - status:Partially_confirmed UniProt:Q9XTH8 protein_id:CAB05201.1
421.0 [0..1] [506..1]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGGGKPP GQWHRPAAPG GAPQLSGFSA VNFGGVPMVG MGVPMGMVNQ AAFSSQGVLG  60
   61 MQGIMGAVPQ QSLPQQQPNF QQQNSLQQGT N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNSGAKNQ RTFVGVVTKM LDTYGFVDDD VFFQHSVIRG SHPRVGDKVM VEANYNPSMP  60
   61 FKWNAYRIQL LNAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [166-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQQEPARQAP QQQQMHQPQR GGQESQRWGA APASGTSDRA DRNGGARGND SPLHRSSAAR  60
   61 RHSPPPRRAS PPRRTSSPKR DARPAREIRD SREPREVRRS PPPRRAASPR KASSPSAPAK 120
  121 NDRKRERSPS GSVAPSVRRE SASPPRRRAR IIPRYECRAQ KPALLSPIVS GSVLRHRYSK 180
  181 LYLPSDYVDL SF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [358-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWVRSFQLDL SLDLSNPIQF HVFNKDVDFI GEEEIQDLDP EDADHRHQVK VLLLSHAGKS  60
   61 EVVKKAFCLM ADGTTDDHQE PQSLLKNLHF LVGARGKETM GIGGSWSPSQ DGADPNSATT 120
  121 MIRTAVRTTK SLTGIDLSSV SQWRKKAMLL PT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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