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View Structure Prediction Details

Protein: CE33760
Organism: Caenorhabditis elegans
Length: 485 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33760.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
242.0 [0..5] [480..1924]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDRFTTRRR ANLESIAQRL LEISQKTEED EANEVGEDDQ HPKNVLNILN TITKEGLEKI  60
   61 VNDIIANGTI IDEMFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLQRFSEKPA LSNPIQRPFY SNLDDNVPSF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.30103
Match: 2fxmA
Description: No description for 2fxmA was found.

Predicted Domain #3
Region A:
Residues: [107-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRNLQKWRLR DELTKSIEQE EKLKAELKHA NDQINMIVEH NKLELDALNK INLEAKAQEK  60
   61 IQEEIIQRCM KRVEDLESIL ETKEQKLNDF EEREYETTCQ LTMKHSLELA EKDQKILELE 120
  121 KYIRNNENQD VVALTRELER LRSQATKDEP STDDSTIKIS MAQHRLELEA QAKMIKTLEA 180
  181 ELSKRQEINA EQIERLIEER NSEIKNLIRE QSKEIHEKNV KIAKFEIKDY ANIFRQISKN 240
  241 IFTNKEAPGP SGRPKKRRMV DDPEDLFHNY EDLDDAKFLE LAKIIETT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.30103
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [395-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKDVTTLINT EGPSEDVSGN FMEAKKIHGA LAQLKEKDQT VSDLKQKTNQ NNKRVDQEDP  60
   61 IEEYEYDYND ESDGESVKSE TSSWDQIDDI F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2i1jA
Description: No description for 2i1jA was found.

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