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View Structure Prediction Details

Protein: CE33668
Organism: Caenorhabditis elegans
Length: 631 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33668.

Description E-value Query
Range
Subject
Range
CE38084 - status:Partially_confirmed UniProt:Q5DX50 protein_id:AAW88393.1
415.0 [0..24] [631..1]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFIFSRGN IFFYVNKITI PDLMSDVLLS KLSTELADLD GEIGQIDQQI SQLRRKKSEL  60
   61 TQKRQAIERK IELKTNEDSD VV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.09691
Match: 1gm5A
Description: RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [83-631]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDRWDRDGFP WSDEATKILK EQFHLEKFRP LQRAAINAVM SKEDAVVILS TGGGKSLCYQ  60
   61 LPALLANGLA LVVSPLISLV EDQILQLRSL GIDSSSLNAN TSKEEAKRVE DAITNKDSKF 120
  121 RLLYVTPEKL AKSKKMMNKL EKSLSVGFLK LIAIDEVHCC SQWGHDFRTD YSFLNVLKRQ 180
  181 FKGVPILGLT ATATSNVLDD VKDMLGIQAA LTFRAGFNRS NLKYKVVQKP GSEDECTEEI 240
  241 AKTIKRDFAG QTGIIYCLSR NDCEKVAKAL KSHGIKAKHY HAYMEPVDRS GAHQGWISGK 300
  301 IQVIVATVAF GMGIDKPNVR FVIHHSLPKS IENYYQESGR AGRDGQPATC ILYYRLADIF 360
  361 KQSSMVQQER TGIQNLYNMV RYAADSSTCR RVKLAEHFEE AWEPSWCQKQ CDTCENGNGF 420
  421 VGTSSKESTD VSEAAKTTVR IIEEHLNSAK DGSGRITGNK LVELLTKKLK GSRNREFCEK 480
  481 LIVNLLLEGY LQEDFHYTVY SVISYVVIGS KWRVYNGKDA IKMRHVEESK SRKRKASSSV 540
  541 EEEDVMVLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.39794
Match: 2v1xA
Description: No description for 2v1xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle