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View Structure Prediction Details

Protein: zfp-1
Organism: Caenorhabditis elegans
Length: 635 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for zfp-1.

Description E-value Query
Range
Subject
Range
zfp-1 - status:Confirmed UniProt:P34447 protein_id:AAK26137.1
432.0 [0..1] [635..233]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLADPLPIKS NKVNNVLGLG SAINAVSLEE RPASGSTVNS GIFVPPPTAF SPPLTTSSRS  60
   61 SVAQDPSPPL TINKNSLSSS GPLIPSTAHL SATTASATPI MANGSTLPPS SETTVGTHCL 120
  121 QQLQIQSAAA AAITQNQIGP SELNG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPAASQLSSF MHEIPARNTT SVASLLPPGA AEYHLNGSGD EEKTVKAVLT APLTKAKRIR  60
   61 DSKNDMMDKT HKRPRANARP PAVLGSMSSG SSGGTVGKSP SMQRLQNLVA PIVSETVTDF 120
  121 QR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [268-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRVADRTAAE RRAAAAQSQP STSTNGGPNV TIPAVVEVHT NSTNSTNHQN NGLTQNAPAS  60
   61 TSMQAGTSSN DGVISQNGTS STSQSNRLNL PSFMEQLLER QWDQGSSLLM ANAHFDVAQL 120
  121 LSCLFQLKSE NFRLEENLSG LRKRRDHLFA LNSRLAEVNT LDVSKRQRSD GLLLQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [443-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQIAHHLDPT SIVPKAEVHK QEPLSAPTSV PLPANHSSSL FEDIKAPKAT YSRKTPSNIP  60
   61 LTVPLSTAAT ALTTTTAASS GAPVNSNIQN HRATPSTAGA PMAATPIMTA VTSANELAAL 120
  121 SPERAQALLN MYRMPLDANV AAQLSMITNF PGQVNPSLFS RLLAVNMMNG GLQPNGQPLS 180
  181 ALPPPTSATP NGK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle