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View Structure Prediction Details

Protein: daf-4
Organism: Caenorhabditis elegans
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for daf-4.

Description E-value Query
Range
Subject
Range
daf-4 - status:Confirmed UniProt:P50488 protein_id:AAC02726.1
277.0 [0..1] [445..1]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQKGTVRLK ALVLICLPLF LIATPVPVAV TEDDRQDRIE SEAAEKEWAN TLVSKVAQSN  60
   61 GTGTIKVSAP AKPTLRRMDN EEDEVISIEC VYYDEMECEK SGDCEITKKT CYSEAHLKAV 120
  121 GCLAVFGLPT QEINSTEPYL KVDKPQYKSL GCMPYQHADS MNCENESSCR QGRSFRGGIG 180
  181 MCCCSTNNCN MPDLIEMVNP SLKKDSDNSA LLWASTPSNM DLESLDKFPF YWIIIIALSV 240
  241 ILCIALLILA YVGWKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2ahxA
Description: Crystal structure of ErbB4/HER4 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [257-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQNKKEEIKK QQKIKFDMEK TDALEAGNVP LVEPEEEMIE MVETPKELPI TDFQLISKGR  60
   61 FGKVFKAQYT PDSGEKRLVA VKKLNEFQKA SFLAEKRIFD ELNEYPKWYK SIVEFVCAEK 120
  121 IGDEYWIVTE FHERLSLYEL LKNNVISITS ANRIIMSMID GLQFLHDDRP YFFGHPKKPI 180
  181 IHRLVENENN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 2qoqA
Description: No description for 2qoqA was found.

YRC Informatics Platform - Version 3.0
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