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View Structure Prediction Details

Protein: nac-3
Organism: Caenorhabditis elegans
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nac-3.

Description E-value Query
Range
Subject
Range
gi|45501274, gi|... - gi|47086231|ref|NP_998067.1| solute carrier family 13 member 3 [Danio rerio], gi|45501274|gb|AAH6737...
299.0 [0..2] [475..53]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVMPLAVT AMLPVVLFPL VGVLDANTTA KEYMNDTNFL FIGGLIMAAA VEKCDLHERV  60
   61 ALSVLRCVGS EPKWIMLGFM TVTALLSSFI SNTATTAMMV PIGQSVVQQL ISSFQHHPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGERGRLGCK KMATGLVLSI CFAANIGGTG TATGTPSNLV MLGQLSALFP KVDGSLNYVT  60
   61 WIFFAYPLML LCLFVAWMTL VSFFLRDAPE KDEAVTEMLK TRYNELPRMT YAEKSVFVCF 120
  121 CILLSLWVFR NPGVVPGFGV FFKKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [265-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYTDATSAMI VAFLLFVLPS ERPDLATYIK KEDLKKRGCL MDWKTMQETF PWSVVLLLGG  60
   61 GFALAAGVKE SGLSLLIGNS LSSIEHLPLW ILQLLTMLIA MVITNICSNT VTASIFVPIV 120
  121 ATLAQRAGHH PFTLMLPTTL ASSFAFIFPV GTPPNAIVFG SGMVKVSDMA FVGGIISLEL 180
  181 LVLTVLYMNS IAYLTLPLLE FPTWAIIANS TMQQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle