YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mab-3
Organism: Caenorhabditis elegans
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mab-3.

Description E-value Query
Range
Subject
Range
mab-3 - DM DNA binding domain status:Partially_confirmed UniProt:O18214 protein_id:CAB16489.1
155.0 [0..1] [148..134]

Back

Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQIKLRRS QQKSRDGKEP KRNSRRKSKD MDMEMMVVTA TDGQKIIGTS ASPSPSSTTD  60
   61 TMSPSLSMSP PCSPSPLLAQ YTLTLAAPIP IYPPIPMNQQ LISLQQQQFL MSIIQNMAPS 120
  121 IGQQAPLLPG I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGSVSSAAI LNEFWSIKIV CFPSLLNFPH NLFLSLVSNS MIFSYFLEFS LFTNFVIFSN  60
   61 FFIHFSPSEP TNLPIFFSSS RPLVLFQKSP FFLNSNNLFV SHQTTYYLSM SLRHLIMSSI 120
  121 SSKIPKFHRY SSVCIDFPLS PPKLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle