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View Structure Prediction Details

Protein: odr-4
Organism: Caenorhabditis elegans
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for odr-4.

Description E-value Query
Range
Subject
Range
odr-4 - status:Confirmed UniProt:Q8I7F8 protein_id:AAN84809.1
604.0 [0..1] [475..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRNRRKSKT TATSHPELHL EKVDPMKTVT ESMILFDVQL QEWVTKSAKN HEFVLSDKGI  60
   61 PASAYFLLGS FCSDGDIHVA YASKCPVHSS ALEENATESS KMLEDEWMSD HAERLLRMLP 120
  121 GGIHVVGIAW FSDKKTFSDR KSHIHKTLGR IQKMNNQI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTANVDDSIS DNMITVFFET PSTTPIGAII DVTNRGNDSA QKVQFQKLEW ISLVTNASAR  60
   61 IVHNVPVD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [227-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGRPTDFYSD LVVATKNFVN NLFQCEFTLL DGEIRDDKEP LIKDIKKNKK TTIEAQLFLN  60
   61 PLYNRELGAI DDIASNMHEV LFDIEVRAAV PIRSTVKDAI RAIKHHLVRN LFARVELHYE 120
  121 SMEVVEEERS PKTGITVHQL PRPATTVLYT HPAILINDFL FEADNVEDAQ KNFDDMMDLQ 180
  181 TSIEHVDEGW ERALTPEEME AVRTPIEDLH FVDFDGSSDS WCTTKTILIT IALIIGLLAS 240
  241 IIYFTVAHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle