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View Structure Prediction Details

Protein: CE32765
Organism: Caenorhabditis elegans
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32765.

Description E-value Query
Range
Subject
Range
gi|14190051 - gi|14190051|gb|AAK55541.1|AF375601_1 potassium channel protein Shal 1.e [Panulirus interruptus]
181.0 [0..4] [258..45]

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Predicted Domain #1
Region A:
Residues: [1-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLNVGGKE FVTSKATLTK FDGYFKNLPE IQQVNPTSPI FVDRSPKHFE TILNFMRDGD  60
   61 VDLPQEYLNQ LLREARFYGL VKLVRDCEQA IARLDVGSGR PSERADPLSD IICNCRSTSN 120
  121 NVAPAVVNSE IKPPNKENDL SIASVPEYDA NQNIVKNSEK MMLEIEKIPS PPKDAKIENY 180
  181 DDYLKLVFSN IIDAARDKIS NWDFKKAGEA LQFAHRGIRG TLSFLTDSRR LCGVAASSFA 240
  241 ELRKLWTWVS RVFVPVRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle