| Protein: | nhr-49 |
| Organism: | Caenorhabditis elegans |
| Length: | 486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-49.
| Description | E-value | Query Range |
Subject Range |
|
|
321.0 | [0..2] | [454..438] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MKNLQMIVIM DLVDPLAEPC AVCGDKSTGT HYGVISCNGC KGFFRRTVLR DQKFTCRFNK 60
61 RCVIDKNFRC ACRYCRFQKC VQVGMKREAI QFERDPVGSP TSGASLNGTP FKKDRSPGYE 120
121 NGNSNGVGSN GMGQE
|
| Detection Method: |  |
| Confidence: | 27.69897 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-486] |
1 11 21 31 41 51
| | | | | |
1 NMRTVPQSSS VIDALMEMEA RVNQEMCNRY RRSQIFANGS GGSNGNDTDI QQGSDSGASA 60
61 FAPPNRPCTT EVDLNEISRT TLLLMVEWAK TINPFMDLSM EDKIILLKNY APQHLILMPA 120
121 FRSPDTTRVC LFNNTYMTRD NNTDLNGFAA FKTSNITPRV LDEIVWPMRQ LQMREQEFVC 180
181 LKALAFLHPE AKGLSNSSQI MIRDARNRVL KALYAFILDQ MPDDAPTRYG NILLLAPALK 240
241 ALTQLLIENM TLTKFFGLAE VDSLLSEFIL DDINDHSTAP VSLQQHLSSP TTLPTNGVSP 300
301 LNPAGSVGSV SSVSGITPTG MLSATLAAPL AIHPLQSQDS ILNSEQNNHM L
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1z5xU |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
