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View Structure Prediction Details

Protein: cit-1.2
Organism: Caenorhabditis elegans
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cit-1.2.

Description E-value Query
Range
Subject
Range
gi|630622 - gi|630622|pir||S44814 F44B9.3 protein - Caenorhabditis elegans
276.0 [0..1] [381..164]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDVEKGRNV YKDMVKTAYY MATDVLIITD WSVRYSCASI ATACVNIAAF FHNINMDDIV  60
   61 PFELSDRWYR LEDQSMTREE VEAMTKEFLD IFSRNPQFHI GSLKKIDPLG KVKIVGMPPQ 120
  121 VSSTVTPSGS SSNLKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.30103
Match: 2pk2A
Description: No description for 2pk2A was found.

Predicted Domain #2
Region A:
Residues: [137-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDLESYKGRP KPLSNSSDSP STRPSFLPDV KNQKVVEQEL MEQRMKEAAQ QKIHRNGHRP  60
   61 SSSSHPLHHH STSSSASNNS NHQNRSSSGL SAHQHQKPYN EDSRSAKRSM MYEETNSSKK 120
  121 PRIDYKMSFV ASSSTTIATM HNDHFSQTTH QQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [289-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NISTYARGVN EMMLNQVAPP PLMSVSAQPS TYQKMCMEYQ RNPADSRHTM SSTQQISPPD  60
   61 EPSPPVSQIL LPPPPPPPIL PPRLDEMEEG ELV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle