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View Structure Prediction Details

Protein: CE32376
Organism: Caenorhabditis elegans
Length: 589 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32376.

Description E-value Query
Range
Subject
Range
CE35858 - status:Partially_confirmed UniProt:Q7JM92 protein_id:CAE48498.1
365.0 [0..1] [542..1]

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Predicted Domain #1
Region A:
Residues: [1-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSLPNYD RTSDDVDASK EVVDTPIQTI SSSHVSFQIT TDPVPSMDYL SIHEDDTSMS  60
   61 SSERTIERGF SRYGRKRSSV RMLLDEVNMT DRKTSWMDTE HRVILNVGGI RHETYSHVLK 120
  121 KIPATRLSRL TPNLANYDPV LNEYFFDRHP GVFSMILNYY RTGKLHYPTN VCGPLFEEEL 180
  181 EFWGLDANQV EPCCWMTYTQ HRDTQDTLAV IESLDLDGDP PTQEEIAKKF GWEDDYYTGN 240
  241 MSQWQRLKPR VWALFDEPWS SKYARVISSL SVAFILASTC SFILKTDPSF QIPDIDVFYS 300
  301 LRVVDEGGFK NYHKTIGTDK PVTSPHPNFF YVDLICNIWF TIELLIRSLF CPSFHKFVRS 360
  361 PLTIIDVIST GAFFFESLLH AILIQTGSLV TLDFLSMICV LRLFKLTQHF SGLKILIQTF 420
  421 KASAQELFLL VFFVILAIVI FAALVYYAER SQLNKDNQFT SIPLGLWWSL VTISTVGFGD 480
  481 MVPKTYLGML VGSLCALMGV LTIALPVPVI VSNFSNLYSH SQARAKLPKK RRRVLQAHEV 540
  541 KPALLGVKQH HGKHRKKSSS ATFNQPPANF KNANGGPSMH DNSASKLMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.30103
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle