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View Structure Prediction Details

Protein: crh-1
Organism: Caenorhabditis elegans
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crh-1.

Description E-value Query
Range
Subject
Range
gi|114630114 - gi|114630114|ref|XP_507739.2| PREDICTED: cAMP responsive element modulator isoform 23 [Pan troglodyt...
153.0 [0..6] [311..27]

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Predicted Domain #1
Region A:
Residues: [1-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKGNGSAQ QQSALQEGGD SEDEARRRRE QLNRRPSYRM ILKDLETADK VMKKEPEETP  60
   61 PSSVDASPLQ SVMRPPPTAP PTSAATPNRI LPSSNAASPY GSPLGSSILS NQPLVLPFAP 120
  121 INGDFDFSAA IAAASQPKVF PGGPQQNGLG GGGGGGGVPG PSSGIAGMSV QPPTSSTPSQ 180
  181 QQSVQSLEGT SGLIGSAMKP MLGIDAVSFP EFGTTDWQSP MLSGGYSSSP SPTMTGGSMR 240
  241 MGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [244-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLHGEDESN RKRQVRLLKN REAAKECRRK KKEYVKCLEN RVSVLENQNK ALIEELKTLK  60
   61 ELYCRKEKDG M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.154902
Match: 1dh3A
Description: Transcription factor Creb
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle