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View Structure Prediction Details

Protein: CE32096
Organism: Caenorhabditis elegans
Length: 147 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32096.

Description E-value Query
Range
Subject
Range
gi|50756506 - gi|50756506|ref|XP_415191.1| PREDICTED: similar to potassium channel tetramerisation domain containi...
162.0 [0..1] [123..183]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFGYADLPE SENEILELKK EAEYYLLNGL ADLCEYQRPV DNFRTCTADE LMRVIVNTKK  60
   61 KVIVINYLTH 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 3kvtA
Description: TETRAMERIZATION DOMAIN FROM AKV3.1 (SHAW-SUBFAMILY) VOLTAGE-GATED POTASSIUM CHANNEL
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [71-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDRLVFVPTG FNFCDFMERH KDKVEVVFFN KLETEYSNTA SVPPHIHDVC WRFNIYNATC  60
   61 MDGRRFESMK DLERWMK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle