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View Structure Prediction Details

Protein: nhx-8
Organism: Caenorhabditis elegans
Length: 681 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhx-8.

Description E-value Query
Range
Subject
Range
gi|50730464 - gi|50730464|ref|XP_416917.1| PREDICTED: similar to Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger...
383.0 [0..12] [680..779]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILANGVTW QLWESTLNQG TATSGIMRFA LKTALSICIF LLIFQTVDSD SSDSSASASV  60
   61 VSGAVKSEDT VVAVNKTDVL GEAIDANATS LEQHGAAIVG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVSEEKKRSL AIFFILFVIM LATLVVHMLI VSKIHWMPES LAIVALGALI GSILSYSRRD  60
   61 WSEIEALSPD VFFLVLLPPI IFENAYNLNK GYFFSNFVPI LTFAIFGTTI SAMVIGAGLY 120
  121 ILGAIGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [228-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFEFTFFECF AFAAMISAVD PVGTLAIFQA VKVESLLYML VFGESMLNDA VSIVLAATAL  60
   61 RHAKPSFNSL PASEIITSAF VTFTEMFFFS ACLGVGIGLL SALLFKHVDL RKTPSLEFAL 120
  121 LLIFSYIPYG FAEALDLSGI MAILFCGISM SQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [380-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTRHNVSPIA QITFRHTFRT ISFVAETSTF AYIGMAFFTI KLNFAPWLIF WSVVLCLLGR  60
   61 ACNVFPLAYL VNQCRKDVQI SMKNQIIMWF SGMRGAVCFA LVLYMDLDKE KKSILLTTVL 120
  121 FLILFTTIFL GGSALPFISF INRCYP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [526-681]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NERQRKRRRT PRNKESTGNS SALMMSKTQE MSFFGSDDWG PKKSALDATS SAGRIMRQLF  60
   61 VRKFTAIERL ENRDKLAALT KRALASDQMT DSDDVEFGGG GGVGGGGRMK DDVTPTRGRS 120
  121 GSRNSSDVII SAGGGGVSGE HHLLISSGSD SSTNEF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle