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View Structure Prediction Details

Protein: ttn-1
Organism: Caenorhabditis elegans
Length: 724 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttn-1.

Description E-value Query
Range
Subject
Range
unc-89 - status:Partially_confirmed UniProt:O01761 protein_id:AAV34800.1
465.0 [0..5] [722..4636]

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Predicted Domain #1
Region A:
Residues: [1-724]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGNEKKGGG LPPTQQRHLN IDTTVGGSIS QPVSPSMSYS TDRETVMRSA SGHATVAETH  60
   61 LIRSIGSQSQ SYTEEHWSSE ITSFVALAPP KFIQVIKAYR VHSTDTISLV VEVASDPPAI 120
  121 FEWFYNEKSV LQDRDRFQVG HGINISRLKV SRPEQGVYKC VTRNPAGVST SYGYITVNAD 180
  181 REHLSSSKED MRLQRQHSVT YHQAPRFLTQ VPNLFVTAGS NVIIDVEVDA NPPARFSWFV 240
  241 NGKEYRDSIH GVEMFSPDVN RSVVRFSIPV AGEYKVVASN VHGSAMSCGH VDIQKERRTD 300
  301 GKLEKFQIEF KKKLVQIIEL EESTLTTSTT AFDPMTTSMR ALGNNGRNSR QAVNMFELNY 360
  361 TQRSSSVPRG VRHLESHIEV SNMTGEEKKT QQQTRTGDDD SSFEIVPPNL PEECAPKIVE 420
  421 PLHSASFLDG QAMSLRCKIT ANPSAAVVWS KDDVNVEDWV LNKDVTTTVL DGGVCELLNP 480
  481 ECFAEDAGLY KCTATNPHGT AETAAFINVE GAEYIKDHEE AEISESVLTD DVHIILPPKF 540
  541 IETLTAETDN FQQLGYVRMV ATVRSVAPIT VSWQKDGMDI YENEKYEVMQ FADGAQILTI 600
  601 RAPTNLDSGV YTCTAESEHG VSNSSCQVEL TISAESSPES FEKVEITPPE EVKETGIDDD 660
  661 IEVILKEEVS GTAQIEKREE EFKLLVKVAD QVASTLVANV FLEAVHEAVK KIVETEDVSL 720
  721 RLKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1e07A
Description: Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle