YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE31974
Organism: Caenorhabditis elegans
Length: 652 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31974.

Description E-value Query
Range
Subject
Range
gi|50753571 - gi|50753571|ref|XP_414046.1| PREDICTED: similar to hypothetical protein BC002770 [Gallus gallus]
310.0 [0..22] [312..123]

Back

Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDAEFNLL TTLYQSVVHD MKHTYPGWDA LSQKAQKLGT QLRATAQCLS TFTEAMQGVC  60
   61 DNANNLKGAS RDVGACVTRV CIKQRAIENR MRSWADALCE ELAISLQQRG NYWKSRCHDM 120
  121 DKTAAKHVKK VRSRKQRPDV TAMNEQREIC TKVLTEQRTQ FSFFIGTLMP VLNAQMNMLD 180
  181 EGAHLRQVVD NLDSTVKHVD TEQLVSSIVS DIAQGPDSAW KQCLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.69897
Match: 2d1lA
Description: No description for 2d1lA was found.

Predicted Domain #2
Region A:
Residues: [226-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAGNKWRSSE DGYSCMGSIR DLSTRATTPA SNFSSEDGMH TLTGNGLGGT TRSISTSCTR  60
   61 NLPLITGNGN MESSASSVIS SSTRYSKPPL QRRNSEKSIG HYSMSSPNTD GSSTYLNLMG 120
  121 NGAGNSSSNT ITEMSQYQQQ HHQPVIRAVS NGTHSNAPPA YQQYINQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [393-652]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQQNGGSIPR PQNLAFEPFN PTTSIGATPT VYHPATPATT SSGGQPETSP GSSATSASAF  60
   61 LISEACRDID QLGSDLENYC SVQDPTRYFI HESSPSSGQK NGTPPAATNT MIAAMIQRRA 120
  121 SHAGDYQQQQ TMSDPGKRAS VSTLGSSNMS NYGVLSHQPP LPQSANSMQN QQVRMRTTSA 180
  181 SRPPPPARRT SQITAATPTA PSVAEQRMNG STMGSRQSLD SAGLYDPAHP QQFYQMSSFN 240
  241 RSNNVNGQAS ATAAAAKFRI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle