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View Structure Prediction Details

Protein: ifa-4
Organism: Caenorhabditis elegans
Length: 558 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ifa-4.

Description E-value Query
Range
Subject
Range
gi|114560153 - gi|114560153|ref|XP_513875.2| PREDICTED: lamin A/C [Pan troglodytes]
352.0 [0..2] [558..417]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTATYGST ISSGTSRTLK ITEIGGSNLT SGMSPFGGHA ASAIRESRTR EKKEMSELND  60
   61 RLASYIEKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFLEAQNRKM EKDLNLLRGK WGHDSTSVKV MYETELRSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.09691
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [109-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDLIADSDKE RAQLEDQIKK LVEELNNYRN KLHEAERGAD VTRKELDNVL GRLGALEAEI  60
   61 ELLKRRISLM EESIGHLKRE NHRMIDSLHH ARIFQAVEQE TLNRIDYQNQ VQTLLEECDF 120
  121 IRRIHDSEIH DLLAMASRDT TVENREYFKN ELSSAIREIR SEYDHVSNTT RTDIESWYKL 180
  181 KVQEIHTQNS RNCLEQNYAR EEVKRLRTTL GDMRGKMADL EGRNLLLEKQ IEDLNYQMEE 240
  241 DMRSYEQSLN DKDTSINKLR DESKILMVEL QMLIDTKQTL DAEIVIYRKM LDGEENRAGL 300
  301 RQLVEQVVKT TSIHQTKEIE SLRVLKGETT SHSSYSRSAK G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [450-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIAIQEAEPS GKYIVLENIS RRDENIGDWK LRRKIAGKRE IVFTFPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #5
Region A:
Residues: [497-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFTLRAQKSV KIFARGQGVH SPPDSLVYDL EDSFGTGNDV VTTLYNKEGE DRASHSQRAS  60
   61 HT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1ivtA
Description: Lamin A/C globular tail domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle