| Protein: | aka-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 605 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aka-1.
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..1] | [551..2232] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MEEVPDMDDL LDEMESDLVK KCCSVQSKPL LPPTSIGMQP RGIKHNPAPR TVVTVSKFVI 60
61 SEDMNEQMEG NINIDTSQLP NTFQTKSSFP PNSDERNI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [99-478] |
1 11 21 31 41 51
| | | | | |
1 GKENEVSARQ EIAHKLKSVH NYSDATNFDP SKKVITQKFS QESEPESEPE PEPEEVSEVE 60
61 EDTLVPETQI ISNLNATARD TEPTATISKP NLDLDTEMED MLAYLNDESV DKSSLKDKPA 120
121 REEGGRDSIE ESANESALYQ FADRFSELVI SEALNHRKMH YDPAVKEFYE ANDSVPDVFA 180
181 MSLDSTHSSL NSFNADNHNY LSEPENSSKK ERMQSVAEEN EASEEPTQSS SETEKNLQNE 240
241 KIDVEFIENS EAIVQNESED VPESNSTSGT VLENIEDHLE SDVVIENGSE SSFVNEKMNE 300
301 ASTAHLVAEQ SVVDDSEIHL ETEDQETLSP ETADSSTNKN SDEFPDEGSQ SEASVNNEEV 360
361 LENVEHVEDE CTVVDAVNEN
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [479-605] |
1 11 21 31 41 51
| | | | | |
1 TDSSIEENDE ENTENRPRFD SSIATIHVLH ESDSDESATP RRERRLTESE LQLGKTSPYW 60
61 IPDSECPNCM LCNTRFTIIT RRHHCRACGR VLCGSCCNEK AFLEYLQEEG KKLQAVRLLP 120
121 PQFLAVY
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1jocA |
| Description: | Eea1; Eea1 homodimerisation domain |
Matching Structure (courtesy of the PDB): |
|
