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View Structure Prediction Details

Protein: ida-1
Organism: Caenorhabditis elegans
Length: 767 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ida-1.

Description E-value Query
Range
Subject
Range
gi|187032118, gi... - gi|39584978|emb|CAE64402.1| Hypothetical protein CBG09094 [Caenorhabditis briggsae], gi|187032118|em...
gi|157773323 - gi|157773323|ref|XP_001664726.1| hypothetical protein CBG09094 [Caenorhabditis briggsae AF16]
640.0 [0..13] [767..13]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFFHSIIVL LFSISTGSAF LLYGCNLSEN LCDNDESCYP DGVFGQCYSS ESGSPEPTVL  60
   61 DNLDDTQLEL LKLELTRLAA KDKDWGDEET QCVLAYFKMS MFYQLQYDPD FCQVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPANVWALIQ LIDTGLTEDP TILDEDVNPE NVTDEDMAQI IEQLKEPSLP TEEDIEEALN  60
   61 AQNEDVDDEI LDQYVQAVVN NENPDFSELS DGQLNILIGR LVDLKKNVEN EEAQLLTGDG 120
  121 EQEMAVPLDD LEERGEQAIL KKDIEQVGEI NQGLDNTEHK IVKGRKDQVV TRVDANRVYL 180
  181 KVHLKNEDQL MPLIEFLQNT IAIPNNL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [323-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFDDFQFENG QLSMRISRFE GAKPKADKRI DSVEGVASAV YKRRKDIARL SGADVRETGI  60
   61 GSGEDGSLPV ESSERDWLLM PVLFVCAFTV TALGLVAAVQ IARSRRHYKD NIQQIAEQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [441-767]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDGKNSFAYQ DLCRQRADGG RASKSSSTSS WCEETAVPTI DISTGHVVLN FLQEYLSEPT  60
   61 KIEAQWNGIK DYRNEERTKT KAEKFASQNR TILPFDDNIV DIDGKTAENE DFYLNASFIY 120
  121 DDDPRQAVYI AAQTPASSQI AAFWQTIWQH GVCLVVNLST PEECKQEKNY WPDTGSEVHG 180
  181 AFEIHLVSEH IWSDDYLVRS FYLKNLQNSQ TRTITQFHYL SWQKESTPTS AKSILEFRRK 240
  241 VNKSYRGRSS AVLVHSWDGS GRTGVYCAVD VLCARLLRGI RQIDVVATVE HLRDQRDGMV 300
  301 ATGDQFKLVY GCVAQEVNHL LKSIATK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 2qepA
Description: No description for 2qepA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle