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View Structure Prediction Details

Protein: ugtp-1
Organism: Caenorhabditis elegans
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ugtp-1.

Description E-value Query
Range
Subject
Range
gi|187033859, gi... - gi|39585109|emb|CAE62760.1| Hypothetical protein CBG06926 [Caenorhabditis briggsae], gi|187033859|em...
gi|157776057 - gi|157776057|ref|XP_001666094.1| hypothetical protein CBG06926 [Caenorhabditis briggsae AF16]
154.0 [0..1] [351..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQNVHISH QDEDKEKLLP NDKDVEKADE SPSSSRPSFV FKCYVIASMT FIWTAYTLTI  60
   61 KYTRSTVNPD MMYSSTSVVL CAEILKLVIT FAMFYKECNF DSRQFSEQVS KYYINAPREL 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKMSVPSFAY ALQNNLDFVG LSNLDAGLYQ VTTQLKVVST AFFMMLFLGR KFSTRRWMAI  60
   61 TLLMFGVAFV QMNNVSASE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.21
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [200-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANTKRETAEN YIVGLSAVLA TCVTAGFAGV YFEKMLKDGG STPFWIRNMQ MYSCGVISAS  60
   61 IACLTDFSRI SDKGFFFGYT DKVWAVVILL GVGGLYISLV MRYLDNLYKS MASAVSIILV 120
  121 VVLSMLIFPD IFIGMYFVLG TICVVLAVLL YNSVNE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle