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View Structure Prediction Details

Protein: stim-1
Organism: Caenorhabditis elegans
Length: 510 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stim-1.

Description E-value Query
Range
Subject
Range
stim-1 - status:Confirmed UniProt:Q9N379 protein_id:AAF59596.3
288.0 [0..1] [510..1]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVSWIIAL YLTINVVIVV NGDRVTRNVE VTAEEEKIRD KLGYEAIRDI HRDMDDDHSG  60
   61 SIDRNESTGF MKEDMQMRGS ERTRRENKFH GDDDAITVDD LWEAWFESIE RTWTNERLVE 120
  121 WLINDVN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-510]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSIVEAVKA KKIDGKILPR FASPNSDFLN KELGIKSSVY RQKLRLNSLD VVLFGYKDNN  60
   61 NRTKDILLAF LALLLTSLIF LYVRQKQKAQ QKVNELSNKL TELKCMETEF EDVQKMLNDE 120
  121 RSKRSISDGV VNHTEMENLR VQLEEAERRL EANSNGSQAP LALQPLLRRT CENEMAFLEK 180
  181 QRQDCFKEMK EAIEMVDRLQ KKQGSVLSSL KLATGAASTS DQVDSKIFAL KSRMEKIHTL 240
  241 TRETQERWLQ IESLCGFPLL YLNGSSSSGS ISNAHSNPNA VNSNFVKKVS PPIPPSQQTA 300
  301 NLRFVPTEQS DSIHSEDTSP IVEDVAISRS LTQDLAEADM QSIVSGSTNG SGSVAALKKR 360
  361 KGIFPKLFRR NTSKSSSLGG TSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle