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View Structure Prediction Details

Protein: CE29597
Organism: Caenorhabditis elegans
Length: 424 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29597.

Description E-value Query
Range
Subject
Range
gi|73950170 - gi|73950170|ref|XP_852973.1| PREDICTED: similar to mitochondrial ribosomal protein S27 [Canis famili...
261.0 [0..1] [422..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKNLLRTF ITRRNFQKSI RQPVLSSSFS LEKEWSDRHV ALGKLGLGGD YEWISAVQKK  60
   61 FIGGGYASAV DVDAAVCVAE QKDQVDDVIE LLYKLRHSVK AAEKLESSEY AIVRLLLKYQ 120
  121 PETIITLAND PINYGVFLNQ HLACIVIDHF LKTSNIQAAA RIVTWMIQQE EL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 2ondA
Description: No description for 2ondA was found.

Predicted Domain #2
Region A:
Residues: [173-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNELLNILGL YVCAKWVELP VEQQTLDLGG ADDEEEDIND DDIRTFKFPY LKNDSFDEHF  60
   61 DLSNPHHLIG KSLQWLSRDT KFIDSQLKSS LNALGAVLFE KLAEANSTIS TAIPCVKSIV 120
  121 AGKLAGKEEE AGVKNILESI GEVEEAKEKL SDIILEHLKK IQVSEEDSLC AVQTKLFGEW 180
  181 NERRQALAKS QAQKVLLRLR QDEIRGELKQ LDEQEEQMSF FKNRLIWEKR AAENTQIDEE 240
  241 SKQRHKKKES TV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.09691
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle