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View Structure Prediction Details

Protein: fmo-4
Organism: Caenorhabditis elegans
Length: 568 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fmo-4.

Description E-value Query
Range
Subject
Range
gi|157759602 - gi|157759602|ref|XP_001672143.1| Hypothetical protein CBG11527 [Caenorhabditis briggsae AF16]
gi|39590541, gi|... - gi|39590541|emb|CAE66281.1| Hypothetical protein CBG11527 [Caenorhabditis briggsae], gi|187030236|em...
421.0 [0..1] [568..1]

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Predicted Domain #1
Region A:
Residues: [1-568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVCVVGAGA SGLPAIKACI EEGLDVVCFE KTADIGGLWN YRPGQKDIGG TVMESTVVNT  60
   61 SKEMMAYSDF PPPAEFANFM HHTKVIEYIK SYAEHFGLMD KIRFNTPVKR ISRNEQNKYI 120
  121 VSLQNGEIEE FEKLILCTGH HAEPSYPELK NLDNFKGKVV HAYDYTNTSG YEGKDVFLLG 180
  181 IGNSALDIAV DIAKIAKSVT ISTRRGTWIF NRVSQGGMPY DVQLFSRYYD TLLKTIPHAV 240
  241 ANDFMEYRLQ QRMDHDVYGL RPDHRFFQQH PTVNDALANL LCAGYITITE DIDTFTENSV 300
  301 IVKGGREFKC DIFLTCTGYT FGFPFVDSDI VEIKNQQVPL YKYVFPPNSD SVAVIGLIQP 360
  361 IGSIAPISEI QSRWAARVFA GRCQLPSSQE QIDDIQKKKA AMKKRYFDSI KHTIQVDYMS 420
  421 YMDEIAEIIG CLPPMKHYLF FYPRFWMKLF MGANVPYAYR LVGPHAWEGA EQAIWTVSER 480
  481 VKKPLKNRQC RIRKHKKRGS TDEYFRYATQ KVIATNISIL FCSGLLLYCS TTSTLPPAVY 540
  541 FFSFFLFFTL YGATLMWFDL QYDMTTIF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.522879
Match: 1zmcA
Description: Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NAD+
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle